CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.753 rna-evm.model.Chr11.753 Chr11 28790648 28793565 PREDICTED: palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] GO:0003676 K22594
gene-evm.TU.Chr11.754 rna-evm.model.Chr11.754 Chr11 28793295 28802679 PREDICTED: Protein rolling stone nan K03327
gene-evm.TU.Chr11.755 rna-evm.model.Chr11.755 Chr11 28805484 28811679 PREDICTED: Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] GO:0008796;GO:0016787 K01518
gene-evm.TU.Chr11.756 rna-evm.model.Chr11.756 Chr11 28817543 28833652 PREDICTED: Serine incorporator 5 GO:0016020 K25655
gene-evm.TU.Chr11.757 rna-evm.model.Chr11.757 Chr11 28846664 28861277 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14389
gene-evm.TU.Chr11.758 rna-evm.model.Chr11.758 Chr11 28863260 28864332 PREDICTED: Lipopolysaccharide cholinephosphotransferase LicD nan K07271
gene-evm.TU.Chr11.759 rna-evm.model.Chr11.759 Chr11 28871887 28875457 PREDICTED: Alpha/beta hydrolase domain-containing protein 17C nan K01076
gene-evm.TU.Chr11.761 rna-evm.model.Chr11.761 Chr11 29070492 29071190 uncharacterized protein nan nan
gene-evm.TU.Chr11.762 rna-evm.model.Chr11.762 Chr11 29214297 29226865 PREDICTED: Collagen-like protein 2 nan K24214
gene-evm.TU.Chr11.763 rna-evm.model.Chr11.763 Chr11 29235374 29258194 PREDICTED: Glucose dehydrogenase [FAD, quinone] GO:0016614;GO:0050660;GO:0055114 K00108

For more detailed data, you can explore the Download section to access the full dataset.