CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.743 rna-evm.model.Chr11.743 Chr11 28687155 28694480 PREDICTED: E3 ubiquitin-protein ligase hecd-1 GO:0004842;GO:0016567;GO:0046872 K12231
gene-evm.TU.Chr11.744 rna-evm.model.Chr11.744 Chr11 28694615 28700285 uncharacterized protein nan K16865
gene-evm.TU.Chr11.745 rna-evm.model.Chr11.745 Chr11 28700777 28707710 PREDICTED: E3 ubiquitin-protein ligase hecd-1 GO:0004842;GO:0016567;GO:0046872 K12231
gene-evm.TU.Chr11.746 rna-evm.model.Chr11.746 Chr11 28711197 28713294 PREDICTED: CBL-interacting protein kinase 19 GO:0004672;GO:0005524;GO:0006468 K08286
gene-evm.TU.Chr11.747 rna-evm.model.Chr11.747 Chr11 28713721 28727137 PREDICTED: Ileal sodium/bile acid cotransporter GO:0016020 K14342
gene-evm.TU.Chr11.748 rna-evm.model.Chr11.748 Chr11 28729113 28738725 PREDICTED: Opioid-binding protein/cell adhesion molecule homolog nan K06774
gene-evm.TU.Chr11.749 rna-evm.model.Chr11.749 Chr11 28741923 28756488 PREDICTED: Neuronal growth regulator 1 nan K06774
gene-evm.TU.Chr11.75 rna-evm.model.Chr11.75 Chr11 3954244 3977030 PREDICTED: Asparagine--tRNA ligase, cytoplasmic GO:0000166;GO:0003676;GO:0004812;GO:0005524;GO:0006418 K01893
gene-evm.TU.Chr11.751 rna-evm.model.Chr11.751 Chr11 28781567 28782502 PREDICTED: coatomer subunit beta' nan K19846
gene-evm.TU.Chr11.752 rna-evm.model.Chr11.752 Chr11 28783013 28789614 uncharacterized protein nan K26791

For more detailed data, you can explore the Download section to access the full dataset.