CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.729 rna-evm.model.Chr11.729 Chr11 28336368 28339340 uncharacterized protein nan K06707
gene-evm.TU.Chr11.73 rna-evm.model.Chr11.73 Chr11 3894418 3910851 PREDICTED: DNA repair protein complementing XP-A cells homolog GO:0003684;GO:0005634;GO:0006289 K10847
gene-evm.TU.Chr11.732 rna-evm.model.Chr11.732 Chr11 28462375 28532450 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr11.733_evm.TU.Chr11.734 rna-evm.model.Chr11.733_evm.model.Chr11.734 Chr11 28544343 28609589 PREDICTED: Ras GTPase-activating protein 1 GO:0005096;GO:0005515;GO:0043087;GO:0043547;GO:0046580 K04352
gene-evm.TU.Chr11.736 rna-evm.model.Chr11.736 Chr11 28622240 28622401 uncharacterized protein nan nan
gene-evm.TU.Chr11.739 rna-evm.model.Chr11.739 Chr11 28644199 28657020 PREDICTED: Neuronal growth regulator 1 nan K06774
gene-evm.TU.Chr11.74 rna-evm.model.Chr11.74 Chr11 3921745 3954003 PREDICTED: Integrator complex subunit 3 nan K13140
gene-evm.TU.Chr11.740 rna-evm.model.Chr11.740 Chr11 28660129 28667469 PREDICTED: Opioid-binding protein/cell adhesion molecule homolog nan K06774
gene-evm.TU.Chr11.741 rna-evm.model.Chr11.741 Chr11 28669426 28678439 PREDICTED: Ileal sodium/bile acid cotransporter GO:0016020 K14342
gene-evm.TU.Chr11.742 rna-evm.model.Chr11.742 Chr11 28679222 28680100 PREDICTED: CBL-interacting serine/threonine-protein kinase 9 GO:0004672;GO:0005524;GO:0006468 K08286

For more detailed data, you can explore the Download section to access the full dataset.