CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.72 rna-evm.model.Chr11.72 Chr11 3886419 3891157 PREDICTED: Nucleotide triphosphate diphosphatase NUDT15 GO:0016787 K20986
gene-evm.TU.Chr11.720 rna-evm.model.Chr11.720 Chr11 28058324 28062956 PREDICTED: Chorion peroxidase nan K19511
gene-evm.TU.Chr11.721 rna-evm.model.Chr11.721 Chr11 28167626 28170377 PREDICTED: Peroxinectin A nan K19511
gene-evm.TU.Chr11.722 rna-evm.model.Chr11.722 Chr11 28199433 28220955 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.723 rna-evm.model.Chr11.723 Chr11 28224390 28226467 uncharacterized protein nan K00508
gene-evm.TU.Chr11.724 rna-evm.model.Chr11.724 Chr11 28235802 28254822 PREDICTED: Dual specificity mitogen-activated protein kinase kinase 5 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K04463
gene-evm.TU.Chr11.725 rna-evm.model.Chr11.725 Chr11 28260788 28272026 PREDICTED: ATP synthase subunit alpha, mitochondrial GO:0005524;GO:0015986;GO:0046034;GO:1902600 K02132
gene-evm.TU.Chr11.726 rna-evm.model.Chr11.726 Chr11 28273895 28286454 PREDICTED: Tubulin-specific chaperone A GO:0007021;GO:0007023;GO:0048487 K17292
gene-evm.TU.Chr11.727 rna-evm.model.Chr11.727 Chr11 28290180 28309076 PREDICTED: male-specific lethal 1 GO:0005515;GO:0007165 K24027
gene-evm.TU.Chr11.728 rna-evm.model.Chr11.728 Chr11 28313535 28335860 PREDICTED: male-specific lethal 1 GO:0005515;GO:0007165 K24027

For more detailed data, you can explore the Download section to access the full dataset.