CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.710 rna-evm.model.Chr11.710 Chr11 27685334 27690646 uncharacterized protein GO:0005515 K24496
gene-evm.TU.Chr11.711 rna-evm.model.Chr11.711 Chr11 27725174 27758930 PREDICTED: Receptor-type tyrosine-protein phosphatase delta nan K06774
gene-evm.TU.Chr11.712 rna-evm.model.Chr11.712 Chr11 27852913 27878698 PREDICTED: Putative amine oxidase [copper-containing] GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr11.713 rna-evm.model.Chr11.713 Chr11 27899789 27903718 PREDICTED: Iron-sulfur cluster co-chaperone protein HscB GO:0001671;GO:0051087;GO:0051259;GO:0097428 K04082
gene-evm.TU.Chr11.714 rna-evm.model.Chr11.714 Chr11 27908671 27926938 PREDICTED: Dynactin subunit 3 nan K10425
gene-evm.TU.Chr11.715 rna-evm.model.Chr11.715 Chr11 27933010 27940055 PREDICTED: Phosphorylated adapter RNA export protein GO:0006408 K14291
gene-evm.TU.Chr11.716 rna-evm.model.Chr11.716 Chr11 27951115 28004235 PREDICTED: Unconventional myosin-Ie GO:0003774;GO:0005515;GO:0005524;GO:0016459 K10356
gene-evm.TU.Chr11.717 rna-evm.model.Chr11.717 Chr11 28006809 28019336 PREDICTED: Fructose-1,6-bisphosphatase 1 GO:0005975;GO:0016791;GO:0042132 K03841
gene-evm.TU.Chr11.718 rna-evm.model.Chr11.718 Chr11 28024091 28039678 PREDICTED: Stomatin-like protein 2, mitochondrial GO:0016020 K26392
gene-evm.TU.Chr11.719 rna-evm.model.Chr11.719 Chr11 28042329 28050300 PREDICTED: Pyroglutamyl-peptidase 1 GO:0005829;GO:0006508;GO:0008233;GO:0016920 K01304

For more detailed data, you can explore the Download section to access the full dataset.