CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.700 rna-evm.model.Chr11.700 Chr11 27468218 27469495 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr11.702 rna-evm.model.Chr11.702 Chr11 27474896 27475456 uncharacterized protein nan K01142
gene-evm.TU.Chr11.703 rna-evm.model.Chr11.703 Chr11 27479460 27512191 PREDICTED: Basigin nan K22653
gene-evm.TU.Chr11.704 rna-evm.model.Chr11.704 Chr11 27520888 27545457 uncharacterized protein nan nan
gene-evm.TU.Chr11.705 rna-evm.model.Chr11.705 Chr11 27569907 27571016 PREDICTED: Zinc transporter ZIP1 GO:0016020;GO:0030001;GO:0046873;GO:0055085 K14709
gene-evm.TU.Chr11.706 rna-evm.model.Chr11.706 Chr11 27571035 27576644 uncharacterized protein nan nan
gene-evm.TU.Chr11.707 rna-evm.model.Chr11.707 Chr11 27582724 27605239 PREDICTED: AP-3 complex subunit mu-1 GO:0006886;GO:0016192;GO:0030131 K12398
gene-evm.TU.Chr11.708 rna-evm.model.Chr11.708 Chr11 27613963 27628496 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr11.709 rna-evm.model.Chr11.709 Chr11 27633583 27645880 PREDICTED: Elongation factor Tu, mitochondrial GO:0003924;GO:0005525 K02358
gene-evm.TU.Chr11.71 rna-evm.model.Chr11.71 Chr11 3870122 3873714 uncharacterized protein nan K22496

For more detailed data, you can explore the Download section to access the full dataset.