CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.667 rna-evm.model.Chr11.667 Chr11 25607424 25616367 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr11.668 rna-evm.model.Chr11.668 Chr11 25618899 25636876 PREDICTED: Mucosa-associated lymphoid tissue lymphoma translocation protein 1 GO:0004197;GO:0006508 K07369
gene-evm.TU.Chr11.67 rna-evm.model.Chr11.67 Chr11 3772383 3777722 uncharacterized protein nan K18279
gene-evm.TU.Chr11.671 rna-evm.model.Chr11.671 Chr11 25688952 25700762 PREDICTED: Synaptotagmin-11 GO:0016020 K19904
gene-evm.TU.Chr11.673 rna-evm.model.Chr11.673 Chr11 25766183 25791527 PREDICTED: Lon protease homolog, mitochondrial GO:0004176;GO:0004252;GO:0005524;GO:0006508;GO:0030163 K08675
gene-evm.TU.Chr11.675 rna-evm.model.Chr11.675 Chr11 26135707 26137228 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 K11496
gene-evm.TU.Chr11.676 rna-evm.model.Chr11.676 Chr11 26117339 26230259 PREDICTED: Ubiquilin-1 GO:0005515 K04523
gene-evm.TU.Chr11.679 rna-evm.model.Chr11.679 Chr11 26247066 26247420 uncharacterized protein nan K07499
gene-evm.TU.Chr11.68 rna-evm.model.Chr11.68 Chr11 3777804 3839148 PREDICTED: Kinesin-like protein KIN-14I GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10406
gene-evm.TU.Chr11.680 rna-evm.model.Chr11.680 Chr11 26247545 26247694 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.