CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.653 rna-evm.model.Chr11.653 Chr11 24885632 24899746 PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like GO:0003899;GO:0006383 K03024
gene-evm.TU.Chr11.654 rna-evm.model.Chr11.654 Chr11 24929363 24931684 PREDICTED: Probable E3 ubiquitin-protein ligase MID2 nan K12026
gene-evm.TU.Chr11.655 rna-evm.model.Chr11.655 Chr11 25055857 25057440 PREDICTED: Dynein heavy chain (Fragment) nan nan
gene-evm.TU.Chr11.656 rna-evm.model.Chr11.656 Chr11 25062746 25065166 uncharacterized protein nan K00468
gene-evm.TU.Chr11.657 rna-evm.model.Chr11.657 Chr11 25067569 25070005 PREDICTED: peptidyl-prolyl isomerase G (cyclophilin G) [EC:5.2.1.8] nan K19449
gene-evm.TU.Chr11.658 rna-evm.model.Chr11.658 Chr11 25019292 25102925 PREDICTED: Lachesin nan K06774
gene-evm.TU.Chr11.66 rna-evm.model.Chr11.66 Chr11 3753051 3771787 PREDICTED: 28S ribosomal protein S29, mitochondrial GO:0005761;GO:0006915;GO:0015935 K17408
gene-evm.TU.Chr11.660 rna-evm.model.Chr11.660 Chr11 25205753 25206098 uncharacterized protein nan K23449
gene-evm.TU.Chr11.663 rna-evm.model.Chr11.663 Chr11 25316170 25369471 PREDICTED: Peptidyl-glycine alpha-amidating monooxygenase B GO:0003824;GO:0004497;GO:0005507;GO:0005515;GO:0006518;GO:0016020;GO:0016715;GO:0055114 K24006
gene-evm.TU.Chr11.664 rna-evm.model.Chr11.664 Chr11 25369529 25385585 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.