CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.644 rna-evm.model.Chr11.644 Chr11 24583324 24594950 PREDICTED: Uncharacterized protein KIAA1958 nan K24675
gene-evm.TU.Chr11.645 rna-evm.model.Chr11.645 Chr11 24603116 24614920 PREDICTED: chitinase [EC:3.2.1.14] nan K19842
gene-evm.TU.Chr11.646 rna-evm.model.Chr11.646 Chr11 24621751 24629214 PREDICTED: Cilia- and flagella-associated protein 53 GO:0003341;GO:0060271 K24225
gene-evm.TU.Chr11.647 rna-evm.model.Chr11.647 Chr11 24633423 24651413 PREDICTED: E3 ubiquitin-protein ligase arih1 GO:0004842;GO:0016567 K11968
gene-evm.TU.Chr11.648 rna-evm.model.Chr11.648 Chr11 24659555 24666264 PREDICTED: CUB and sushi domain-containing protein 3 nan K24469
gene-evm.TU.Chr11.649 rna-evm.model.Chr11.649 Chr11 24691973 24718256 PREDICTED: Lon protease homolog, mitochondrial GO:0004176;GO:0004252;GO:0005524;GO:0006508;GO:0030163 K08675
gene-evm.TU.Chr11.65 rna-evm.model.Chr11.65 Chr11 3688499 3752753 PREDICTED: Histone-lysine N-methyltransferase ASH1L GO:0003677;GO:0003682;GO:0005515;GO:0005634;GO:0018024 K06101
gene-evm.TU.Chr11.650 rna-evm.model.Chr11.650 Chr11 24729050 24803013 uncharacterized protein GO:0005515 K19360
gene-evm.TU.Chr11.651 rna-evm.model.Chr11.651 Chr11 24811401 24846848 PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial GO:0003676;GO:0005524;GO:0006457;GO:0051082 K03544
gene-evm.TU.Chr11.652 rna-evm.model.Chr11.652 Chr11 24864357 24885490 PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial GO:0005524;GO:0006457;GO:0051082 K03544

For more detailed data, you can explore the Download section to access the full dataset.