CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.613 rna-evm.model.Chr11.613 Chr11 23695401 23732075 PREDICTED: Barrier-to-autointegration factor GO:0003677 K21870
gene-evm.TU.Chr11.615 rna-evm.model.Chr11.615 Chr11 23782693 23798498 PREDICTED: Organic cation transporter protein GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr11.616 rna-evm.model.Chr11.616 Chr11 23805464 23812903 PREDICTED: Organic cation transporter protein GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr11.617 rna-evm.model.Chr11.617 Chr11 23829494 23854771 PREDICTED: Organic cation transporter protein GO:0016020;GO:0055085 K08202
gene-evm.TU.Chr11.618 rna-evm.model.Chr11.618 Chr11 23857984 23876517 PREDICTED: Solute carrier family 22 member 5 GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr11.619 rna-evm.model.Chr11.619 Chr11 23880029 23886014 uncharacterized protein nan nan
gene-evm.TU.Chr11.62 rna-evm.model.Chr11.62 Chr11 3612027 3612512 PREDICTED: Probable RNA-directed DNA polymerase from transposon BS nan K23090
gene-evm.TU.Chr11.620 rna-evm.model.Chr11.620 Chr11 23885579 23905732 PREDICTED: Organic cation transporter-like protein GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr11.621 rna-evm.model.Chr11.621 Chr11 23913805 23919414 uncharacterized protein nan nan
gene-evm.TU.Chr11.622 rna-evm.model.Chr11.622 Chr11 23944139 23979330 PREDICTED: Ankyrin repeat domain-containing protein 23 GO:0005515 K21434

For more detailed data, you can explore the Download section to access the full dataset.