CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.624 rna-evm.model.Chr11.624 Chr11 23990334 23992856 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K26653
gene-evm.TU.Chr11.625 rna-evm.model.Chr11.625 Chr11 23992546 24009408 PREDICTED: Myocyte-specific enhancer factor 2A GO:0003677;GO:0046983 K09260
gene-evm.TU.Chr11.626 rna-evm.model.Chr11.626.1 Chr11 24014109 24064112 PREDICTED: Myocyte-specific enhancer factor 2A GO:0003677;GO:0046983 K09260
gene-evm.TU.Chr11.627 rna-evm.model.Chr11.627 Chr11 24116246 24160585 PREDICTED: Anoctamin-8 nan K19502
gene-evm.TU.Chr11.628 rna-evm.model.Chr11.628 Chr11 24166546 24181726 PREDICTED: Beta-hexosaminidase subunit alpha GO:0004553;GO:0004563;GO:0005975 K12373
gene-evm.TU.Chr11.629 rna-evm.model.Chr11.629 Chr11 24184572 24184937 PREDICTED: La-related protein 6 nan K18733
gene-evm.TU.Chr11.630 rna-evm.model.Chr11.630 Chr11 24219878 24232983 PREDICTED: T-complex protein 1 subunit gamma GO:0005524 K09495
gene-evm.TU.Chr11.631 rna-evm.model.Chr11.631 Chr11 24239898 24251827 PREDICTED: GTP-binding protein Rit2 GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07832
gene-evm.TU.Chr11.632 rna-evm.model.Chr11.632.1 Chr11 24251949 24265275 PREDICTED: Receptor expression-enhancing protein 5 nan K17279
gene-evm.TU.Chr11.633 rna-evm.model.Chr11.633 Chr11 24267260 24271983 PREDICTED: Coiled-coil domain-containing protein 124-A nan K04887

For more detailed data, you can explore the Download section to access the full dataset.