CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.634 rna-evm.model.Chr11.634 Chr11 24278813 24298696 PREDICTED: Chromatin assembly factor 1 subunit A nan K10750
gene-evm.TU.Chr11.635 rna-evm.model.Chr11.635 Chr11 24312502 24385799 PREDICTED: DmX-like protein 2 GO:0005515 K24155
gene-evm.TU.Chr11.636 rna-evm.model.Chr11.636 Chr11 24392356 24408070 PREDICTED: Eukaryotic translation initiation factor 3 subunit J GO:0003743;GO:0005737;GO:0005852 K03245
gene-evm.TU.Chr11.637 rna-evm.model.Chr11.637 Chr11 24438701 24457655 PREDICTED: Homeobox protein orthopedia GO:0003677 K24901
gene-evm.TU.Chr11.638 rna-evm.model.Chr11.638 Chr11 24462182 24484147 PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 GO:0005634;GO:0005732;GO:0006364;GO:0034457 K14559
gene-evm.TU.Chr11.639 rna-evm.model.Chr11.639 Chr11 24484263 24507904 PREDICTED: Nucleolar protein 6 nan K14544
gene-evm.TU.Chr11.64 rna-evm.model.Chr11.64 Chr11 3650337 3664817 PREDICTED: G kinase-anchoring protein 1 GO:0005794;GO:0007165 K09150
gene-evm.TU.Chr11.640 rna-evm.model.Chr11.640 Chr11 24512173 24528543 PREDICTED: Elongation factor 2 GO:0003924;GO:0005525 K03234
gene-evm.TU.Chr11.641 rna-evm.model.Chr11.641 Chr11 24551983 24555607 uncharacterized protein nan K15804
gene-evm.TU.Chr11.643 rna-evm.model.Chr11.643 Chr11 24565023 24574492 PREDICTED: Myoneurin nan K10467

For more detailed data, you can explore the Download section to access the full dataset.