CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.602 rna-evm.model.Chr11.602 Chr11 23277152 23279005 PREDICTED: nucleosome-remodeling factor subunit BPTF nan nan
gene-evm.TU.Chr11.605 rna-evm.model.Chr11.605 Chr11 23309911 23317265 PREDICTED: Alpha-methylacyl-CoA racemase GO:0003824 K01796
gene-evm.TU.Chr11.606 rna-evm.model.Chr11.606 Chr11 23317307 23332788 PREDICTED: DNA-directed RNA polymerase II subunit GRINL1A nan K21987
gene-evm.TU.Chr11.607 rna-evm.model.Chr11.607 Chr11 23335383 23348036 PREDICTED: Mitochondrial import inner membrane translocase subunit TIM44 nan K17804
gene-evm.TU.Chr11.608 rna-evm.model.Chr11.608.4 Chr11 23351215 23496803 PREDICTED: Anucleate primary sterigmata protein B nan K16808
gene-evm.TU.Chr11.609 rna-evm.model.Chr11.609 Chr11 23521325 23524318 PREDICTED: Synaptotagmin-11 nan K19904
gene-evm.TU.Chr11.61 rna-evm.model.Chr11.61 Chr11 3544149 3552963 PREDICTED: Sugar transporter SWEET1 GO:0016020 K15382
gene-evm.TU.Chr11.610 rna-evm.model.Chr11.610 Chr11 23615157 23676961 PREDICTED: Band 4.1-like protein 3 GO:0005856;GO:0008092 K23961
gene-evm.TU.Chr11.611 rna-evm.model.Chr11.611 Chr11 23682835 23683251 PREDICTED: U7 snRNA-associated Sm-like protein LSm10 nan K25591
gene-evm.TU.Chr11.612 rna-evm.model.Chr11.612 Chr11 23683326 23694925 PREDICTED: UPF0235 protein C15orf40 homolog nan K09131

For more detailed data, you can explore the Download section to access the full dataset.