CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.59 rna-evm.model.Chr11.59 Chr11 3376265 3377517 uncharacterized protein GO:0006672;GO:0016020;GO:0016811 K04711
gene-evm.TU.Chr11.590 rna-evm.model.Chr11.590 Chr11 22524608 22525846 PREDICTED: G-protein coupled receptor 183-A GO:0004930;GO:0007186;GO:0016020 K04305
gene-evm.TU.Chr11.592 rna-evm.model.Chr11.592 Chr11 22793828 22794600 uncharacterized protein nan nan
gene-evm.TU.Chr11.594 rna-evm.model.Chr11.594 Chr11 22880823 22882348 PREDICTED: splicing factor 3B subunit 2 nan K24642
gene-evm.TU.Chr11.598 rna-evm.model.Chr11.598 Chr11 23163257 23175862 PREDICTED: F-box/WD repeat-containing protein 5 GO:0005515 K10263
gene-evm.TU.Chr11.599 rna-evm.model.Chr11.599 Chr11 23175911 23191474 PREDICTED: Protein AF-9 GO:0006355 K15187
gene-evm.TU.Chr11.6 rna-evm.model.Chr11.6 Chr11 170466 243703 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr11.60 rna-evm.model.Chr11.60 Chr11 3392401 3398659 uncharacterized protein nan K10063
gene-evm.TU.Chr11.600 rna-evm.model.Chr11.600 Chr11 23193149 23207268 PREDICTED: Cotranscriptional regulator FAM172A homolog nan K06113
gene-evm.TU.Chr11.601 rna-evm.model.Chr11.601 Chr11 23221758 23268851 PREDICTED: Uncharacterized membrane protein C20F10.07 nan K19951

For more detailed data, you can explore the Download section to access the full dataset.