CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.567 rna-evm.model.Chr11.567 Chr11 21936306 21937585 PREDICTED: sporulation-specific protein 15-like nan K09892
gene-evm.TU.Chr11.57 rna-evm.model.Chr11.57.1 Chr11 3298492 3337570 PREDICTED: Putative ankyrin repeat protein L271 GO:0005515 K02580
gene-evm.TU.Chr11.570 rna-evm.model.Chr11.570 Chr11 21996630 22028200 PREDICTED: protein MPAN nan K23168
gene-evm.TU.Chr11.571 rna-evm.model.Chr11.571 Chr11 22031976 22041571 PREDICTED: Histidine N-acetyltransferase nan K22888
gene-evm.TU.Chr11.574 rna-evm.model.Chr11.574 Chr11 22141270 22155965 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 3 GO:0008270;GO:0016579;GO:0004843 K11986
gene-evm.TU.Chr11.575 rna-evm.model.Chr11.575.4 Chr11 22169031 22214708 PREDICTED: Homer protein homolog 2 nan K15010
gene-evm.TU.Chr11.577 rna-evm.model.Chr11.577 Chr11 22263387 22270017 PREDICTED: zinc finger MYM-type protein 1-like nan nan
gene-evm.TU.Chr11.58 rna-evm.model.Chr11.58 Chr11 3346670 3372689 PREDICTED: Death-associated protein kinase 1 GO:0005515 K06694
gene-evm.TU.Chr11.582 rna-evm.model.Chr11.582 Chr11 22307847 22314202 PREDICTED: piRNA biogenesis protein EXD1 GO:0003676;GO:0006139;GO:0008408 K18740
gene-evm.TU.Chr11.583 rna-evm.model.Chr11.583 Chr11 22323508 22364403 PREDICTED: Chymotrypsinogen A GO:0004252;GO:0006508 K09640

For more detailed data, you can explore the Download section to access the full dataset.