CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.557 rna-evm.model.Chr11.557 Chr11 21642752 21699045 PREDICTED: Kinesin-like protein KIN-14I GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10406
gene-evm.TU.Chr11.558 rna-evm.model.Chr11.558 Chr11 21708881 21719619 PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein GO:0003723 K11089
gene-evm.TU.Chr11.559 rna-evm.model.Chr11.559 Chr11 21721619 21722313 uncharacterized protein nan nan
gene-evm.TU.Chr11.56 rna-evm.model.Chr11.56 Chr11 3259484 3262719 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K10772
gene-evm.TU.Chr11.560 rna-evm.model.Chr11.560 Chr11 21730287 21743432 uncharacterized protein nan K22496
gene-evm.TU.Chr11.561 rna-evm.model.Chr11.561 Chr11 21753582 21756801 PREDICTED: Protein CA_C1420 GO:0006725;GO:0008198;GO:0016491 K00455
gene-evm.TU.Chr11.562 rna-evm.model.Chr11.562 Chr11 21757022 21760408 PREDICTED: Nucleotide triphosphate diphosphatase NUDT15 GO:0016787 K20986
gene-evm.TU.Chr11.564 rna-evm.model.Chr11.564 Chr11 21797427 21843241 PREDICTED: Integrator complex subunit 3 nan K13140
gene-evm.TU.Chr11.565 rna-evm.model.Chr11.565 Chr11 21843475 21864456 PREDICTED: Asparagine--tRNA ligase, cytoplasmic GO:0000166;GO:0003676;GO:0004812;GO:0005524;GO:0006418 K01893
gene-evm.TU.Chr11.566 rna-evm.model.Chr11.566 Chr11 21877646 21907195 PREDICTED: CREB-regulated transcription coactivator 1 GO:0005634;GO:0005737;GO:0008140;GO:0032793;GO:0051289 K15309

For more detailed data, you can explore the Download section to access the full dataset.