CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.544 rna-evm.model.Chr11.544 Chr11 21155506 21156894 uncharacterized protein GO:0006672;GO:0016020;GO:0016811 K04711
gene-evm.TU.Chr11.545 rna-evm.model.Chr11.545 Chr11 21195643 21209435 uncharacterized protein nan K06561
gene-evm.TU.Chr11.546 rna-evm.model.Chr11.546 Chr11 21283283 21287783 PREDICTED: alpha-kinase nan K24295
gene-evm.TU.Chr11.547 rna-evm.model.Chr11.547 Chr11 21324463 21326332 uncharacterized protein nan nan
gene-evm.TU.Chr11.550 rna-evm.model.Chr11.550 Chr11 21328085 21329734 uncharacterized protein nan K15767
gene-evm.TU.Chr11.551 rna-evm.model.Chr11.551 Chr11 21390243 21401137 PREDICTED: Sugar transporter SWEET1 GO:0016020 K15382
gene-evm.TU.Chr11.553 rna-evm.model.Chr11.553 Chr11 21529013 21539100 PREDICTED: G kinase-anchoring protein 1 GO:0005794;GO:0007165 K24659
gene-evm.TU.Chr11.554 rna-evm.model.Chr11.554 Chr11 21547100 21619426 PREDICTED: Histone-lysine N-methyltransferase ASH1L GO:0003677;GO:0003682;GO:0005515;GO:0005634;GO:0018024 K06101
gene-evm.TU.Chr11.555 rna-evm.model.Chr11.555 Chr11 21619726 21634196 PREDICTED: 28S ribosomal protein S29, mitochondrial GO:0005761;GO:0006915;GO:0015935 K17408
gene-evm.TU.Chr11.556 rna-evm.model.Chr11.556 Chr11 21635100 21639739 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.