CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.535 rna-evm.model.Chr11.535 Chr11 20532789 20539345 PREDICTED: Opioid-binding protein/cell adhesion molecule nan K06774
gene-evm.TU.Chr11.536 rna-evm.model.Chr11.536 Chr11 20537857 20545177 PREDICTED: Hemicentin-2 nan K06772
gene-evm.TU.Chr11.537 rna-evm.model.Chr11.537 Chr11 20550242 20558117 PREDICTED: Limbic system-associated membrane protein nan K06772
gene-evm.TU.Chr11.538 rna-evm.model.Chr11.538 Chr11 20561426 20568389 PREDICTED: Nucleoside diphosphate-linked moiety X motif 17 GO:0016787 K03574
gene-evm.TU.Chr11.539 rna-evm.model.Chr11.539 Chr11 20573471 20590596 PREDICTED: Sorting nexin-2 GO:0006886;GO:0030904;GO:0035091;GO:0042147 K17917
gene-evm.TU.Chr11.54 rna-evm.model.Chr11.54 Chr11 2981523 3025043 PREDICTED: Zinc finger protein 608 GO:0003676 nan
gene-evm.TU.Chr11.540 rna-evm.model.Chr11.540 Chr11 20719767 20725584 uncharacterized protein nan K12575
gene-evm.TU.Chr11.541 rna-evm.model.Chr11.541 Chr11 20723901 20762839 PREDICTED: Zinc finger protein 608 GO:0003676 nan
gene-evm.TU.Chr11.542 rna-evm.model.Chr11.542 Chr11 21081266 21123389 PREDICTED: Putative ankyrin repeat protein L271 GO:0005515 K02580
gene-evm.TU.Chr11.543 rna-evm.model.Chr11.543 Chr11 21125367 21150539 PREDICTED: Ankyrin-3 GO:0005515 K06694

For more detailed data, you can explore the Download section to access the full dataset.