CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.523 rna-evm.model.Chr11.523 Chr11 20086779 20092146 PREDICTED: Reticulocyte-binding protein 2 homolog a nan K03646
gene-evm.TU.Chr11.525 rna-evm.model.Chr11.525 Chr11 20120740 20132764 uncharacterized protein nan nan
gene-evm.TU.Chr11.526 rna-evm.model.Chr11.526 Chr11 20151364 20152506 PREDICTED: Neuromedin-U receptor 2 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr11.527 rna-evm.model.Chr11.527 Chr11 20223652 20265881 PREDICTED: serine/arginine repetitive matrix protein 1-like GO:0035591 K24026
gene-evm.TU.Chr11.529 rna-evm.model.Chr11.529 Chr11 20279071 20288330 PREDICTED: myosin-2 heavy chain, non muscle-like nan K20283
gene-evm.TU.Chr11.53 rna-evm.model.Chr11.53 Chr11 2805046 2820703 PREDICTED: Sorting nexin-2 GO:0006886;GO:0030904;GO:0035091;GO:0042147 K17917
gene-evm.TU.Chr11.530 rna-evm.model.Chr11.530 Chr11 20290717 20299699 PREDICTED: Ubiquitin-like protein 7 GO:0005515 K04523
gene-evm.TU.Chr11.532 rna-evm.model.Chr11.532.2 Chr11 20387377 20410521 PREDICTED: Nuclear receptor subfamily 2 group F member 1-A GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K14032
gene-evm.TU.Chr11.533 rna-evm.model.Chr11.533 Chr11 20482748 20529276 PREDICTED: Ultraviolet-B receptor UVR8 nan K10615
gene-evm.TU.Chr11.534 rna-evm.model.Chr11.534 Chr11 20521264 20522919 PREDICTED: cAMP-regulated D2 protein nan K01050

For more detailed data, you can explore the Download section to access the full dataset.