CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.512 rna-evm.model.Chr11.512 Chr11 19854919 19892794 PREDICTED: 3'-5' RNA helicase YTHDC2 GO:0003676;GO:0003723;GO:0004386;GO:0005515;GO:0005524 K20099
gene-evm.TU.Chr11.513_evm.TU.Chr11.514 rna-evm.model.Chr11.513_evm.model.Chr11.514 Chr11 19901972 19924595 PREDICTED: Heterogeneous nuclear ribonucleoprotein 27C GO:0003676;GO:0003729;GO:0007281 K14411
gene-evm.TU.Chr11.515 rna-evm.model.Chr11.515 Chr11 19926215 19934032 PREDICTED: Collagen alpha-4(VI) chain nan K06238
gene-evm.TU.Chr11.516 rna-evm.model.Chr11.516 Chr11 19939235 19951179 PREDICTED: Collagen alpha-4(VI) chain nan K06238
gene-evm.TU.Chr11.517 rna-evm.model.Chr11.517.1 Chr11 19957142 19963629 PREDICTED: Cartilage matrix protein nan K06238
gene-evm.TU.Chr11.518 rna-evm.model.Chr11.518 Chr11 20011538 20013790 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K10750
gene-evm.TU.Chr11.52 rna-evm.model.Chr11.52 Chr11 2792411 2801626 PREDICTED: Nucleoside diphosphate-linked moiety X motif 17 GO:0016787 K03574
gene-evm.TU.Chr11.520 rna-evm.model.Chr11.520 Chr11 20015681 20021220 uncharacterized protein nan K02650
gene-evm.TU.Chr11.521 rna-evm.model.Chr11.521 Chr11 20029024 20040235 PREDICTED: Arrestin domain-containing protein 3 nan K26229
gene-evm.TU.Chr11.522 rna-evm.model.Chr11.522 Chr11 20040546 20067175 PREDICTED: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial GO:0016616;GO:0055114 K00030

For more detailed data, you can explore the Download section to access the full dataset.