CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.500 rna-evm.model.Chr11.500 Chr11 19357111 19366683 PREDICTED: Proprotein convertase subtilisin/kexin type 5 nan K08654
gene-evm.TU.Chr11.501 rna-evm.model.Chr11.501 Chr11 19382506 19414245 PREDICTED: Ubiquitin-associated protein 2 nan K26545
gene-evm.TU.Chr11.502 rna-evm.model.Chr11.502 Chr11 19418299 19436703 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr11.503 rna-evm.model.Chr11.503 Chr11 19466400 19481563 uncharacterized protein nan nan
gene-evm.TU.Chr11.504 rna-evm.model.Chr11.504 Chr11 19492132 19503992 PREDICTED: Protein disulfide-isomerase A3 GO:0045454 K08056
gene-evm.TU.Chr11.505 rna-evm.model.Chr11.505 Chr11 19514718 19634145 PREDICTED: Unconventional myosin-IXb GO:0003774;GO:0005515;GO:0005524;GO:0007165;GO:0016459;GO:0035556 K10360
gene-evm.TU.Chr11.508 rna-evm.model.Chr11.508 Chr11 19784774 19785910 PREDICTED: ATP-dependent DNA helicase RRM3 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr11.509 rna-evm.model.Chr11.509 Chr11 19786466 19787814 PREDICTED: ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] nan K26274
gene-evm.TU.Chr11.51 rna-evm.model.Chr11.51 Chr11 2782673 2790684 PREDICTED: Opioid-binding protein/cell adhesion molecule nan K06772
gene-evm.TU.Chr11.510 rna-evm.model.Chr11.510 Chr11 19788358 19791972 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] GO:0004803;GO:0006313 K23209

For more detailed data, you can explore the Download section to access the full dataset.