CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.490 rna-evm.model.Chr11.490 Chr11 18689709 18769049 PREDICTED: Transducin-like enhancer protein 3-B GO:0005515;GO:0005634;GO:0006355 K04497
gene-evm.TU.Chr11.491 rna-evm.model.Chr11.491 Chr11 18797153 18810475 PREDICTED: Mediator of RNA polymerase II transcription subunit 27 GO:0016592 K15170
gene-evm.TU.Chr11.492 rna-evm.model.Chr11.492 Chr11 18812789 18819457 PREDICTED: Ankyrin-1 GO:0005515 K15503
gene-evm.TU.Chr11.494 rna-evm.model.Chr11.494 Chr11 18829138 18860392 PREDICTED: HAUS augmin-like complex subunit 6 GO:0051225;GO:0070652 K16589
gene-evm.TU.Chr11.495 rna-evm.model.Chr11.495 Chr11 18862780 18866657 PREDICTED: F-box and leucine-rich repeat protein 13 GO:0005515;GO:0031146 K10314
gene-evm.TU.Chr11.496 rna-evm.model.Chr11.496 Chr11 19075687 19082665 PREDICTED: Neuronal acetylcholine receptor subunit alpha-9-I GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.497 rna-evm.model.Chr11.497 Chr11 19083471 19084066 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr11.499 rna-evm.model.Chr11.499 Chr11 19291283 19346446 PREDICTED: Furin GO:0004252;GO:0006508 K01349
gene-evm.TU.Chr11.5 rna-evm.model.Chr11.5 Chr11 90074 99216 PREDICTED: Cytochrome P450 1A1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr11.50 rna-evm.model.Chr11.50 Chr11 2774560 2777448 PREDICTED: Hemicentin-2 nan K06772

For more detailed data, you can explore the Download section to access the full dataset.