CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.476 rna-evm.model.Chr11.476 Chr11 18236873 18248528 PREDICTED: Spindle and kinetochore-associated protein 1 GO:0007059;GO:0008017;GO:0051301 K26094
gene-evm.TU.Chr11.478 rna-evm.model.Chr11.478 Chr11 18414419 18434278 PREDICTED: Hormone receptor 4 GO:0003700;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr11.48 rna-evm.model.Chr11.48 Chr11 2767142 2768560 PREDICTED: dynein heavy chain nan K21303
gene-evm.TU.Chr11.481 rna-evm.model.Chr11.481 Chr11 18513465 18514752 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr11.482 rna-evm.model.Chr11.482 Chr11 18515264 18517261 uncharacterized protein nan nan
gene-evm.TU.Chr11.485 rna-evm.model.Chr11.485 Chr11 18561166 18581823 PREDICTED: N-alpha-acetyltransferase 35, NatC auxiliary subunit GO:0017196;GO:0031417 K20823
gene-evm.TU.Chr11.486 rna-evm.model.Chr11.486 Chr11 18588044 18590531 PREDICTED: Forkhead box protein B1 GO:0003700;GO:0006355;GO:0043565 K09395
gene-evm.TU.Chr11.487 rna-evm.model.Chr11.487 Chr11 18606030 18608630 uncharacterized protein nan K24191
gene-evm.TU.Chr11.488 rna-evm.model.Chr11.488 Chr11 18610200 18620701 PREDICTED: Uncharacterized protein MG039 homolog GO:0016491;GO:0055114 K00111
gene-evm.TU.Chr11.489 rna-evm.model.Chr11.489 Chr11 18624971 18678268 PREDICTED: AP-5 complex subunit beta-1 GO:0016197 K19022

For more detailed data, you can explore the Download section to access the full dataset.