CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.461 rna-evm.model.Chr11.461 Chr11 17131670 17143510 PREDICTED: Potassium channel subfamily K member 18 GO:0005267;GO:0016020;GO:0071805 K05323
gene-evm.TU.Chr11.462 rna-evm.model.Chr11.462 Chr11 17470277 17475172 PREDICTED: Hemicentin-2 nan K06772
gene-evm.TU.Chr11.463 rna-evm.model.Chr11.463 Chr11 17656310 17656696 uncharacterized protein nan K11244
gene-evm.TU.Chr11.467 rna-evm.model.Chr11.467 Chr11 17688285 17696606 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr11.468 rna-evm.model.Chr11.468 Chr11 17697721 17703453 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr11.469 rna-evm.model.Chr11.469 Chr11 17710701 17717449 PREDICTED: Putative ankyrin repeat protein RF_0381 GO:0005515 K21440
gene-evm.TU.Chr11.47 rna-evm.model.Chr11.47 Chr11 2756216 2760545 PREDICTED: cAMP-regulated D2 protein GO:0004104 K01050
gene-evm.TU.Chr11.470 rna-evm.model.Chr11.470 Chr11 17724558 17735205 PREDICTED: ARL14 effector protein nan K05873
gene-evm.TU.Chr11.473 rna-evm.model.Chr11.473 Chr11 18002285 18050063 PREDICTED: Gliomedin GO:0045162 K16364
gene-evm.TU.Chr11.475 rna-evm.model.Chr11.475 Chr11 18230501 18233701 PREDICTED: Ganglioside GM2 activator GO:0006689;GO:0008047 K12383

For more detailed data, you can explore the Download section to access the full dataset.