CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.452 rna-evm.model.Chr11.452 Chr11 16835992 16847137 PREDICTED: rRNA N6-adenosine-methyltransferase ZCCHC4 GO:0003676;GO:0008168;GO:0008270;GO:0008988;GO:0031167 K25177
gene-evm.TU.Chr11.453 rna-evm.model.Chr11.453 Chr11 16849787 16851653 PREDICTED: BTB/POZ domain-containing protein KCTD14 GO:0005515;GO:0051260 K21917
gene-evm.TU.Chr11.454 rna-evm.model.Chr11.454 Chr11 16853141 16899043 PREDICTED: DNA mismatch repair protein Msh6 GO:0005524;GO:0006298;GO:0030983 K08737
gene-evm.TU.Chr11.455 rna-evm.model.Chr11.455 Chr11 16903978 16919670 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 GO:0003677;GO:0003697;GO:0003899;GO:0005666;GO:0006351 K03023
gene-evm.TU.Chr11.456 rna-evm.model.Chr11.456 Chr11 16919897 16939728 PREDICTED: Aryl hydrocarbon receptor nuclear translocator homolog GO:0003700;GO:0005634;GO:0005667;GO:0005737;GO:0006355;GO:0046983 K09097
gene-evm.TU.Chr11.457 rna-evm.model.Chr11.457 Chr11 16990676 17000527 PREDICTED: Four-jointed box protein 1 nan K16674
gene-evm.TU.Chr11.458 rna-evm.model.Chr11.458 Chr11 17010814 17022225 PREDICTED: Four-jointed box protein 1 nan K16674
gene-evm.TU.Chr11.459 rna-evm.model.Chr11.459 Chr11 17068350 17070196 uncharacterized protein nan nan
gene-evm.TU.Chr11.46 rna-evm.model.Chr11.46 Chr11 2692820 2765797 PREDICTED: Ultraviolet-B receptor UVR8 nan K22372
gene-evm.TU.Chr11.460 rna-evm.model.Chr11.460 Chr11 17113972 17123907 uncharacterized protein nan K24731

For more detailed data, you can explore the Download section to access the full dataset.