CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.441 rna-evm.model.Chr11.441 Chr11 16344883 16348164 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr11.443 rna-evm.model.Chr11.443 Chr11 16449977 16463030 uncharacterized protein nan K25534
gene-evm.TU.Chr11.444 rna-evm.model.Chr11.444 Chr11 16467627 16542558 PREDICTED: Limbic system-associated membrane protein nan K06774
gene-evm.TU.Chr11.446 rna-evm.model.Chr11.446 Chr11 16602730 16636739 PREDICTED: Aldehyde dehydrogenase, mitochondrial GO:0016491;GO:0055114 K07249
gene-evm.TU.Chr11.447 rna-evm.model.Chr11.447 Chr11 16640297 16658409 PREDICTED: Gamma-tubulin complex component 4 GO:0000226;GO:0000922;GO:0005815;GO:0007020;GO:0043015 K16571
gene-evm.TU.Chr11.448 rna-evm.model.Chr11.448 Chr11 16660026 16693468 PREDICTED: Sorting nexin-27 GO:0005515;GO:0006886;GO:0007165;GO:0035091 K17936
gene-evm.TU.Chr11.449 rna-evm.model.Chr11.449 Chr11 16792948 16800018 PREDICTED: Survival motor neuron protein GO:0003723;GO:0005634;GO:0005737;GO:0006397 K13129
gene-evm.TU.Chr11.45 rna-evm.model.Chr11.45.1 Chr11 2601711 2625979 PREDICTED: Nuclear receptor subfamily 2 group F member 1-A GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K14032
gene-evm.TU.Chr11.450 rna-evm.model.Chr11.450 Chr11 16800159 16810950 PREDICTED: RE1-silencing transcription factor A GO:0003676 K09191
gene-evm.TU.Chr11.451 rna-evm.model.Chr11.451 Chr11 16825100 16834352 PREDICTED: Apoptosis regulator BAX GO:0042981 K02159

For more detailed data, you can explore the Download section to access the full dataset.