CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.432 rna-evm.model.Chr11.432 Chr11 15983263 15986871 uncharacterized protein nan nan
gene-evm.TU.Chr11.433 rna-evm.model.Chr11.433 Chr11 15998562 16002617 PREDICTED: 40S ribosomal protein S17 GO:0003735;GO:0005840;GO:0006412 K02962
gene-evm.TU.Chr11.434 rna-evm.model.Chr11.434 Chr11 16004512 16021350 PREDICTED: Beta-hexosaminidase subunit beta GO:0004553;GO:0004563;GO:0005975 K12373
gene-evm.TU.Chr11.435 rna-evm.model.Chr11.435 Chr11 16021576 16030684 PREDICTED: Programmed cell death protein 7 nan K17589
gene-evm.TU.Chr11.436 rna-evm.model.Chr11.436 Chr11 16045968 16050942 PREDICTED: Protein D1 (Fragment) nan K06910
gene-evm.TU.Chr11.437 rna-evm.model.Chr11.437 Chr11 16054863 16062185 PREDICTED: Ribosome biogenesis protein NSA2 homolog nan K14842
gene-evm.TU.Chr11.438 rna-evm.model.Chr11.438 Chr11 16219913 16230073 uncharacterized protein nan nan
gene-evm.TU.Chr11.439 rna-evm.model.Chr11.439 Chr11 16334898 16342676 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr11.44 rna-evm.model.Chr11.44 Chr11 2517911 2524818 PREDICTED: Ubiquitin-like protein 7 GO:0005515 K04523
gene-evm.TU.Chr11.440 rna-evm.model.Chr11.440 Chr11 16342691 16343266 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209

For more detailed data, you can explore the Download section to access the full dataset.