CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.423 rna-evm.model.Chr11.423 Chr11 15682228 15704015 PREDICTED: Peptidyl-prolyl cis-trans isomerase FKBP8 GO:0003755;GO:0005515 K09574
gene-evm.TU.Chr11.424 rna-evm.model.Chr11.424 Chr11 15737197 15746120 PREDICTED: L-proline trans-4-hydroxylase nan K00477
gene-evm.TU.Chr11.425 rna-evm.model.Chr11.425 Chr11 15749572 15757580 PREDICTED: Uncharacterized protein C18H10.09 GO:0008270;GO:0046872 K13056
gene-evm.TU.Chr11.426 rna-evm.model.Chr11.426 Chr11 15765487 15775146 PREDICTED: Lysine-specific demethylase JMJ30 nan K19219
gene-evm.TU.Chr11.427 rna-evm.model.Chr11.427 Chr11 15776639 15791551 PREDICTED: Zinc finger protein 687 GO:0003676 K24375
gene-evm.TU.Chr11.428 rna-evm.model.Chr11.428.3 Chr11 15795235 15866548 PREDICTED: Band 4.1-like protein 4A GO:0005856 K23962
gene-evm.TU.Chr11.429 rna-evm.model.Chr11.429 Chr11 15868531 15930680 PREDICTED: Polycystic kidney disease protein 1-like 2 GO:0005509;GO:0005515;GO:0016020 K04988
gene-evm.TU.Chr11.43 rna-evm.model.Chr11.43 Chr11 2511084 2516023 PREDICTED: myosin-2 heavy chain, non muscle-like nan K20283
gene-evm.TU.Chr11.430 rna-evm.model.Chr11.430 Chr11 15942718 15949672 PREDICTED: Protein FAM184A nan K20283
gene-evm.TU.Chr11.431 rna-evm.model.Chr11.431 Chr11 15950890 15959513 PREDICTED: Gigasin-6 nan K01467

For more detailed data, you can explore the Download section to access the full dataset.