CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.412 rna-evm.model.Chr11.412 Chr11 15438635 15459957 uncharacterized protein nan K04857
gene-evm.TU.Chr11.413 rna-evm.model.Chr11.413 Chr11 15463698 15465991 PREDICTED: Anaphase-promoting complex subunit 11 GO:0004842;GO:0005680 K03358
gene-evm.TU.Chr11.414 rna-evm.model.Chr11.414 Chr11 15466317 15467123 PREDICTED: Isopentenyl-diphosphate Delta-isomerase 1 GO:0016787 K01823
gene-evm.TU.Chr11.416 rna-evm.model.Chr11.416 Chr11 15471918 15494745 PREDICTED: Kelch-like protein 31 GO:0005515 K10467
gene-evm.TU.Chr11.417 rna-evm.model.Chr11.417 Chr11 15517199 15517968 PREDICTED: brain-derived neurotrophic factor GO:0005102 K04356
gene-evm.TU.Chr11.418 rna-evm.model.Chr11.418 Chr11 15533853 15534783 PREDICTED: bromodomain-containing protein 2 nan K07499
gene-evm.TU.Chr11.419 rna-evm.model.Chr11.419 Chr11 15544841 15557795 PREDICTED: brain-derived neurotrophic factor GO:0005102 K04356
gene-evm.TU.Chr11.420 rna-evm.model.Chr11.420 Chr11 15633083 15639494 PREDICTED: peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] nan K09563
gene-evm.TU.Chr11.421 rna-evm.model.Chr11.421 Chr11 15646071 15649815 PREDICTED: Peptidyl-prolyl cis-trans isomerase C GO:0000413;GO:0003755 K09563
gene-evm.TU.Chr11.422 rna-evm.model.Chr11.422 Chr11 15652239 15669624 PREDICTED: Ankyrin repeat family A protein 2 GO:0005515 K21486

For more detailed data, you can explore the Download section to access the full dataset.