CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.399 rna-evm.model.Chr11.399 Chr11 15089404 15098669 PREDICTED: Uncharacterized protein C9orf85 homolog nan K06664
gene-evm.TU.Chr11.4 rna-evm.model.Chr11.4 Chr11 21204 23221 uncharacterized protein nan nan
gene-evm.TU.Chr11.400 rna-evm.model.Chr11.400 Chr11 15101570 15103963 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr11.402 rna-evm.model.Chr11.402 Chr11 15230894 15235501 PREDICTED: NLR family CARD domain-containing protein 3 nan nan
gene-evm.TU.Chr11.404 rna-evm.model.Chr11.404 Chr11 15285721 15296796 PREDICTED: DDB1- and CUL4-associated factor 12 GO:0005515 K11803
gene-evm.TU.Chr11.405 rna-evm.model.Chr11.405 Chr11 15298893 15319771 PREDICTED: Centrosomal protein of 120 kDa nan K16459
gene-evm.TU.Chr11.406 rna-evm.model.Chr11.406 Chr11 15334831 15353231 PREDICTED: Prelamin-A/C nan K07611
gene-evm.TU.Chr11.407 rna-evm.model.Chr11.407 Chr11 15354781 15358287 PREDICTED: KxDL motif-containing protein 1 nan K20818
gene-evm.TU.Chr11.408 rna-evm.model.Chr11.408 Chr11 15363737 15374172 PREDICTED: Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 nan K10703
gene-evm.TU.Chr11.41 rna-evm.model.Chr11.41 Chr11 2450443 2494320 uncharacterized protein GO:0035591 K24026

For more detailed data, you can explore the Download section to access the full dataset.