CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.388 rna-evm.model.Chr11.388 Chr11 14963602 14966928 PREDICTED: cAMP-regulated phosphoprotein 19-A nan nan
gene-evm.TU.Chr11.389 rna-evm.model.Chr11.389 Chr11 14974550 14981689 PREDICTED: Ubiquitin-associated protein 1 GO:0000813;GO:0043130;GO:0043162 K24629
gene-evm.TU.Chr11.390 rna-evm.model.Chr11.390 Chr11 14989669 14993800 PREDICTED: G-protein coupled receptor 157 nan K08467
gene-evm.TU.Chr11.391 rna-evm.model.Chr11.391 Chr11 14997434 15000585 PREDICTED: Protein KRTCAP2 homolog nan K09811
gene-evm.TU.Chr11.392 rna-evm.model.Chr11.392 Chr11 15002244 15008924 PREDICTED: low-density lipoprotein receptor-related protein 1B GO:0005272;GO:0006814;GO:0016020 K04832
gene-evm.TU.Chr11.393 rna-evm.model.Chr11.393 Chr11 15016787 15028747 PREDICTED: Protein RRNAD1 nan K24071
gene-evm.TU.Chr11.395 rna-evm.model.Chr11.395 Chr11 15034310 15045903 PREDICTED: Coiled-coil domain-containing protein 112 nan K14000
gene-evm.TU.Chr11.396 rna-evm.model.Chr11.396 Chr11 15048385 15052524 PREDICTED: Protein FAM221B nan nan
gene-evm.TU.Chr11.397 rna-evm.model.Chr11.397 Chr11 15059747 15065215 uncharacterized protein nan nan
gene-evm.TU.Chr11.398 rna-evm.model.Chr11.398 Chr11 15082041 15087478 PREDICTED: Calcium and integrin-binding family member 3 GO:0005509 K23837

For more detailed data, you can explore the Download section to access the full dataset.