CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.379 rna-evm.model.Chr11.379 Chr11 14707828 14733683 PREDICTED: Elongator complex protein 1 GO:0002098;GO:0033588 K11373
gene-evm.TU.Chr11.38 rna-evm.model.Chr11.38 Chr11 2395408 2405164 PREDICTED: Alpha-methylacyl-CoA racemase GO:0003824 K01796
gene-evm.TU.Chr11.380 rna-evm.model.Chr11.380 Chr11 14778814 14781112 PREDICTED: Testicular acid phosphatase homolog nan K14410
gene-evm.TU.Chr11.381 rna-evm.model.Chr11.381 Chr11 14781598 14784321 PREDICTED: E3 ubiquitin-protein ligase HACE1 [EC:2.3.2.26] nan K10997
gene-evm.TU.Chr11.382 rna-evm.model.Chr11.382 Chr11 14787161 14790584 uncharacterized protein nan nan
gene-evm.TU.Chr11.383 rna-evm.model.Chr11.383 Chr11 14806884 14843527 PREDICTED: Katanin p60 ATPase-containing subunit A-like 2 GO:0005515;GO:0005524 K07767
gene-evm.TU.Chr11.384 rna-evm.model.Chr11.384 Chr11 14848494 14849478 PREDICTED: TBC1 domain family member 15 nan K17671
gene-evm.TU.Chr11.385 rna-evm.model.Chr11.385 Chr11 14855524 14856846 PREDICTED: Long-chain-fatty-acid--CoA ligase ACSBG2 nan K15013
gene-evm.TU.Chr11.386 rna-evm.model.Chr11.386 Chr11 14857209 14919543 PREDICTED: Long-chain-fatty-acid--CoA ligase ACSBG2 GO:0003824 K15013
gene-evm.TU.Chr11.387 rna-evm.model.Chr11.387 Chr11 14922326 14951077 PREDICTED: Collagen type IV alpha-3-binding protein GO:0008289 K08283

For more detailed data, you can explore the Download section to access the full dataset.