CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.364 rna-evm.model.Chr11.364 Chr11 14125179 14141064 PREDICTED: WD repeat-containing protein 41 GO:0005515;GO:0010506 K23610
gene-evm.TU.Chr11.365 rna-evm.model.Chr11.365 Chr11 14142719 14143153 PREDICTED: toll-interleukin 1 receptor (TIR) domain-containing adaptor protein GO:0005515;GO:0007165 K05403
gene-evm.TU.Chr11.366 rna-evm.model.Chr11.366 Chr11 14151580 14206011 PREDICTED: S phase cyclin A-associated protein in the endoplasmic reticulum nan K24869
gene-evm.TU.Chr11.368 rna-evm.model.Chr11.368 Chr11 14231999 14232643 PREDICTED: Uncharacterized protein PF11_0207 nan K10294
gene-evm.TU.Chr11.369 rna-evm.model.Chr11.369 Chr11 14255189 14283083 PREDICTED: Insulin gene enhancer protein ISL-1 GO:0003677 K09370
gene-evm.TU.Chr11.37 rna-evm.model.Chr11.37 Chr11 2387746 2393010 PREDICTED: DNA-directed RNA polymerase II subunit GRINL1A nan K21987
gene-evm.TU.Chr11.371 rna-evm.model.Chr11.371 Chr11 14347560 14349063 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K21754
gene-evm.TU.Chr11.375 rna-evm.model.Chr11.375.2 Chr11 14539552 14553016 PREDICTED: Acetylcholine receptor subunit alpha-type acr-16 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.376 rna-evm.model.Chr11.376 Chr11 14612062 14622194 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr11.378 rna-evm.model.Chr11.378 Chr11 14691579 14701574 PREDICTED: Coadhesin (Fragment) GO:0005515 K15412

For more detailed data, you can explore the Download section to access the full dataset.