CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.35 rna-evm.model.Chr11.35.2 Chr11 2238769 2354938 PREDICTED: protein N-terminal asparagine amidohydrolase [EC:3.5.1.121] nan K16808
gene-evm.TU.Chr11.352 rna-evm.model.Chr11.352 Chr11 13894315 13904168 PREDICTED: Armadillo repeat-containing protein 6 GO:0005515 K24166
gene-evm.TU.Chr11.353 rna-evm.model.Chr11.353 Chr11 13906980 13938733 PREDICTED: Protein SMG5 nan K11125
gene-evm.TU.Chr11.354 rna-evm.model.Chr11.354 Chr11 13959598 13986994 uncharacterized protein nan nan
gene-evm.TU.Chr11.355 rna-evm.model.Chr11.355 Chr11 14003134 14028426 PREDICTED: male-specific lethal 1 GO:0005515;GO:0007165 K23336
gene-evm.TU.Chr11.356 rna-evm.model.Chr11.356 Chr11 14033829 14039265 PREDICTED: Transmembrane protein 53-A nan K09789
gene-evm.TU.Chr11.36 rna-evm.model.Chr11.36 Chr11 2367247 2384360 PREDICTED: Mitochondrial import inner membrane translocase subunit TIM44 nan K17804
gene-evm.TU.Chr11.360 rna-evm.model.Chr11.360 Chr11 14077929 14088884 PREDICTED: N-acetylgalactosamine kinase GO:0004335;GO:0005524;GO:0005534;GO:0006012;GO:0046835 K18674
gene-evm.TU.Chr11.362 rna-evm.model.Chr11.362 Chr11 14101294 14111903 PREDICTED: secretion-regulating guanine nucleotide exchange factor nan K14996
gene-evm.TU.Chr11.363 rna-evm.model.Chr11.363 Chr11 14113502 14122624 PREDICTED: Polyubiquitin (Fragment) GO:0005515 K08770

For more detailed data, you can explore the Download section to access the full dataset.