CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.335 rna-evm.model.Chr11.335 Chr11 13648543 13651210 PREDICTED: Protein YNG1 GO:0008270 K11319
gene-evm.TU.Chr11.337 rna-evm.model.Chr11.337 Chr11 13713096 13723959 PREDICTED: calcium-responsive transcription factor GO:0003676 K21595
gene-evm.TU.Chr11.339 rna-evm.model.Chr11.339 Chr11 13759576 13761320 PREDICTED: hemicentin GO:0008270 nan
gene-evm.TU.Chr11.34 rna-evm.model.Chr11.34 Chr11 2185753 2191253 PREDICTED: Synaptotagmin-11 nan K19904
gene-evm.TU.Chr11.340 rna-evm.model.Chr11.340 Chr11 13761425 13770675 PREDICTED: Chromatin modification-related protein YNG2 nan K11396
gene-evm.TU.Chr11.342 rna-evm.model.Chr11.342 Chr11 13801404 13802999 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K14530
gene-evm.TU.Chr11.343 rna-evm.model.Chr11.343 Chr11 13807315 13810368 PREDICTED: THAP domain-containing protein 11 nan K16933
gene-evm.TU.Chr11.345 rna-evm.model.Chr11.345 Chr11 13876047 13882526 PREDICTED: Probable transcription factor Ken (Fragment) GO:0003676 K24492
gene-evm.TU.Chr11.347 rna-evm.model.Chr11.347 Chr11 13883183 13885113 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr11.349 rna-evm.model.Chr11.349 Chr11 13887912 13888711 PREDICTED: ATP-binding protein nan K06948

For more detailed data, you can explore the Download section to access the full dataset.