CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.310 rna-evm.model.Chr11.310 Chr11 12684289 12689311 PREDICTED: NEDD4-like E3 ubiquitin-protein ligase WWP2 [EC:2.3.2.26] nan K26029
gene-evm.TU.Chr11.311 rna-evm.model.Chr11.311 Chr11 12691588 12693357 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr11.312 rna-evm.model.Chr11.312 Chr11 12716666 12754578 PREDICTED: obscurin-RhoGEF [EC:2.7.11.1] nan K06790
gene-evm.TU.Chr11.314 rna-evm.model.Chr11.314 Chr11 12832463 12834040 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676;GO:0003677 K22594
gene-evm.TU.Chr11.315 rna-evm.model.Chr11.315 Chr11 12836660 12844279 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020;GO:0016500 K04307
gene-evm.TU.Chr11.316 rna-evm.model.Chr11.316 Chr11 12875469 12876318 PREDICTED: D(2) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.317 rna-evm.model.Chr11.317 Chr11 13010103 13021355 PREDICTED: Synaptotagmin-3 nan K19904
gene-evm.TU.Chr11.319 rna-evm.model.Chr11.319 Chr11 13107824 13112250 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr11.32 rna-evm.model.Chr11.32.1 Chr11 2087686 2148428 PREDICTED: Band 4.1-like protein 3 GO:0005856;GO:0008092 K23961
gene-evm.TU.Chr11.323 rna-evm.model.Chr11.323 Chr11 13203402 13229058 PREDICTED: PWWP domain-containing DNA repair factor 3 nan K23386

For more detailed data, you can explore the Download section to access the full dataset.