CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.3 rna-evm.model.Chr11.3 Chr11 15886 17037 uncharacterized protein nan nan
gene-evm.TU.Chr11.30 rna-evm.model.Chr11.30 Chr11 2071387 2077707 PREDICTED: UPF0235 protein C15orf40 homolog nan K09131
gene-evm.TU.Chr11.303 rna-evm.model.Chr11.303 Chr11 12534917 12544337 PREDICTED: Proline-rich protein PRCC nan K13105
gene-evm.TU.Chr11.304 rna-evm.model.Chr11.304 Chr11 12544642 12553348 PREDICTED: 60S ribosomal protein L4 GO:0003735;GO:0005840;GO:0006412 K02930
gene-evm.TU.Chr11.305 rna-evm.model.Chr11.305 Chr11 12591151 12634181 PREDICTED: Phospholipid-transporting ATPase ID GO:0000287;GO:0140326;GO:0005524;GO:0015914;GO:0016020 K01530
gene-evm.TU.Chr11.306 rna-evm.model.Chr11.306 Chr11 12641820 12643623 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr11.307 rna-evm.model.Chr11.307 Chr11 12674988 12675509 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr11.308 rna-evm.model.Chr11.308 Chr11 12679644 12681830 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr11.309 rna-evm.model.Chr11.309 Chr11 12683439 12683997 PREDICTED: voltage-dependent calcium channel T type alpha-1H nan K14398
gene-evm.TU.Chr11.31 rna-evm.model.Chr11.31 Chr11 2077781 2078185 PREDICTED: U7 snRNA-associated Sm-like protein LSm10 nan K25591

For more detailed data, you can explore the Download section to access the full dataset.