CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.289 rna-evm.model.Chr11.289 Chr11 11669615 11670730 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763
gene-evm.TU.Chr11.29 rna-evm.model.Chr11.29 Chr11 1855865 1856287 uncharacterized protein nan K11622
gene-evm.TU.Chr11.290 rna-evm.model.Chr11.290 Chr11 11830857 11842219 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.291 rna-evm.model.Chr11.291 Chr11 11855336 11863355 PREDICTED: D(2) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.292 rna-evm.model.Chr11.292 Chr11 11872451 11873300 PREDICTED: Trace amine-associated receptor 4 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.293 rna-evm.model.Chr11.293 Chr11 12050578 12057292 PREDICTED: Neuropeptide receptor 15 GO:0004930;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr11.294 rna-evm.model.Chr11.294 Chr11 12097488 12098524 PREDICTED: Transposable element Tcb1 transposase nan K07494
gene-evm.TU.Chr11.295 rna-evm.model.Chr11.295 Chr11 12160803 12161780 PREDICTED: Protein unc-13 homolog C nan K16761
gene-evm.TU.Chr11.296 rna-evm.model.Chr11.296 Chr11 12241901 12242560 PREDICTED: Zinc finger protein 84 GO:0003676 K22534
gene-evm.TU.Chr11.297 rna-evm.model.Chr11.297 Chr11 12243589 12249295 uncharacterized protein nan K23209

For more detailed data, you can explore the Download section to access the full dataset.