CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.273 rna-evm.model.Chr11.273 Chr11 10884971 10891340 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.274 rna-evm.model.Chr11.274 Chr11 10896772 10911617 PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase GO:0004420;GO:0015936;GO:0050662;GO:0055114 K00021
gene-evm.TU.Chr11.275 rna-evm.model.Chr11.275 Chr11 10916225 10927020 PREDICTED: BTB/POZ domain-containing protein 2 GO:0005515 K10477
gene-evm.TU.Chr11.276 rna-evm.model.Chr11.276 Chr11 10949266 10984854 PREDICTED: Protein dead ringer homolog GO:0003677 K25856
gene-evm.TU.Chr11.277 rna-evm.model.Chr11.277 Chr11 10985143 11056852 PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog GO:0005515;GO:0005730;GO:0006364 K14549
gene-evm.TU.Chr11.282 rna-evm.model.Chr11.282 Chr11 11154930 11246357 PREDICTED: Adhesion G-protein coupled receptor V1 GO:0004930;GO:0007154;GO:0007194;GO:0016020 K18263
gene-evm.TU.Chr11.283 rna-evm.model.Chr11.283 Chr11 11262902 11275835 PREDICTED: Replicase polyprotein 1a nan K25129
gene-evm.TU.Chr11.285 rna-evm.model.Chr11.285 Chr11 11356700 11357953 PREDICTED: Probable G-protein coupled receptor 139 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.287 rna-evm.model.Chr11.287 Chr11 11571383 11574938 uncharacterized protein nan K14590
gene-evm.TU.Chr11.288 rna-evm.model.Chr11.288 Chr11 11618509 11619318 uncharacterized protein GO:0003676;GO:0008270 K12597

For more detailed data, you can explore the Download section to access the full dataset.