CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.26 rna-evm.model.Chr11.26 Chr11 1684496 1693746 uncharacterized protein nan K12337
gene-evm.TU.Chr11.260 rna-evm.model.Chr11.260 Chr11 10592201 10599151 PREDICTED: Carbohydrate sulfotransferase 4 GO:0008146 K01022
gene-evm.TU.Chr11.262 rna-evm.model.Chr11.262 Chr11 10633567 10641774 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr11.264 rna-evm.model.Chr11.264 Chr11 10683274 10687192 PREDICTED: Fibropellin-1 GO:0005509 K16681
gene-evm.TU.Chr11.266 rna-evm.model.Chr11.266 Chr11 10748562 10749764 PREDICTED: T-cell-specific guanine nucleotide triphosphate-binding protein 2 GO:0005515;GO:0005525;GO:0007165;GO:0016020 K17072
gene-evm.TU.Chr11.267 rna-evm.model.Chr11.267 Chr11 10754375 10814664 PREDICTED: Putative ferric-chelate reductase 1 nan K25381
gene-evm.TU.Chr11.268 rna-evm.model.Chr11.268 Chr11 10835959 10840560 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K12797
gene-evm.TU.Chr11.269 rna-evm.model.Chr11.269 Chr11 10841186 10845754 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K22698
gene-evm.TU.Chr11.27 rna-evm.model.Chr11.27 Chr11 1738235 1741065 PREDICTED: Regucalcin GO:0005509;GO:0030234 K01053
gene-evm.TU.Chr11.270 rna-evm.model.Chr11.270 Chr11 10864323 10867204 PREDICTED: gamma-tubulin complex component 6 nan K12849

For more detailed data, you can explore the Download section to access the full dataset.