CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.244 rna-evm.model.Chr11.244 Chr11 9873264 9877875 PREDICTED: Protein canopy homolog 2 nan K22936
gene-evm.TU.Chr11.247 rna-evm.model.Chr11.247 Chr11 9888693 9889610 PREDICTED: LOW QUALITY PROTEIN: spastin-like nan K13254
gene-evm.TU.Chr11.249 rna-evm.model.Chr11.249 Chr11 9909164 9910015 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr11.25 rna-evm.model.Chr11.25 Chr11 1628106 1670561 PREDICTED: Peptidyl-prolyl cis-trans isomerase E GO:0000413;GO:0003676;GO:0003755 K09564
gene-evm.TU.Chr11.252 rna-evm.model.Chr11.252 Chr11 10005501 10008456 PREDICTED: Putative molluscan insulin-related peptide(s) receptor GO:0004672;GO:0004713;GO:0005524;GO:0006468 K04527
gene-evm.TU.Chr11.253 rna-evm.model.Chr11.253 Chr11 10008890 10063305 PREDICTED: Insulin-like peptide receptor GO:0004672;GO:0004714;GO:0005044;GO:0005515;GO:0005524;GO:0006468;GO:0007169;GO:0016020 K04527
gene-evm.TU.Chr11.254_evm.TU.Chr11.255 rna-evm.model.Chr11.254_evm.model.Chr11.255 Chr11 10074711 10090626 PREDICTED: centromere protein H GO:0000776;GO:0051382 K11500
gene-evm.TU.Chr11.257 rna-evm.model.Chr11.257 Chr11 10395612 10396199 PREDICTED: transmembrane channel-like protein nan K14555
gene-evm.TU.Chr11.258 rna-evm.model.Chr11.258 Chr11 10397410 10440160 PREDICTED: BDNF/NT-3 growth factors receptor GO:0004672;GO:0004713;GO:0004714;GO:0005524;GO:0005886;GO:0006468;GO:0007169 K04360
gene-evm.TU.Chr11.259 rna-evm.model.Chr11.259 Chr11 10463654 10464799 uncharacterized protein nan K06532

For more detailed data, you can explore the Download section to access the full dataset.