CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.233 rna-evm.model.Chr11.233 Chr11 9665212 9675412 PREDICTED: Retinal homeobox protein Rx3 GO:0003677;GO:0003700;GO:0006366 K09332
gene-evm.TU.Chr11.234 rna-evm.model.Chr11.234 Chr11 9677297 9678553 PREDICTED: Apelin receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr11.235 rna-evm.model.Chr11.235 Chr11 9681571 9692537 PREDICTED: MAM and LDL-receptor class A domain-containing protein 2 (Fragment) GO:0016020 K05119
gene-evm.TU.Chr11.236 rna-evm.model.Chr11.236 Chr11 9713276 9722669 PREDICTED: Protein pygopus nan K14960
gene-evm.TU.Chr11.237 rna-evm.model.Chr11.237 Chr11 9724035 9738504 PREDICTED: Osteoclast-stimulating factor 1 GO:0005515 K06694
gene-evm.TU.Chr11.238 rna-evm.model.Chr11.238 Chr11 9741775 9742929 PREDICTED: Lysine-rich nucleolar protein 1 nan K15225
gene-evm.TU.Chr11.239 rna-evm.model.Chr11.239 Chr11 9750235 9750975 PREDICTED: Growth arrest-specific protein 1 homolog GO:0051726 K06232
gene-evm.TU.Chr11.241 rna-evm.model.Chr11.241 Chr11 9770307 9777346 PREDICTED: Tetraspanin-3 GO:0016020 K17293
gene-evm.TU.Chr11.242 rna-evm.model.Chr11.242 Chr11 9783200 9788020 PREDICTED: NAD-dependent protein deacetylase sirtuin-6 GO:0070403 K11416
gene-evm.TU.Chr11.243 rna-evm.model.Chr11.243 Chr11 9794069 9866532 PREDICTED: Neuroendocrine convertase 1 GO:0004252;GO:0006508 K01359

For more detailed data, you can explore the Download section to access the full dataset.