CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.223 rna-evm.model.Chr11.223 Chr11 9053280 9060408 PREDICTED: Aquaporin-10 GO:0015267;GO:0016020;GO:0055085 K09877
gene-evm.TU.Chr11.224 rna-evm.model.Chr11.224 Chr11 9064522 9103356 PREDICTED: Importin-11 GO:0006886;GO:0031267 K25201
gene-evm.TU.Chr11.225 rna-evm.model.Chr11.225 Chr11 9247843 9251900 PREDICTED: Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 nan K23222
gene-evm.TU.Chr11.226 rna-evm.model.Chr11.226 Chr11 9290285 9321032 PREDICTED: Cardioacceleratory peptide receptor GO:0004930;GO:0005000;GO:0007186;GO:0016020 K08434
gene-evm.TU.Chr11.227 rna-evm.model.Chr11.227 Chr11 9464515 9473710 PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like, partial GO:0004518;GO:0006281 K10771
gene-evm.TU.Chr11.228 rna-evm.model.Chr11.228 Chr11 9606645 9607430 PREDICTED: Interleukin 17-like protein GO:0005125;GO:0005576 K05491
gene-evm.TU.Chr11.229 rna-evm.model.Chr11.229 Chr11 9624516 9628235 PREDICTED: Enkurin nan K25647
gene-evm.TU.Chr11.23 rna-evm.model.Chr11.23 Chr11 1374185 1430460 PREDICTED: Receptor-type tyrosine-protein phosphatase T GO:0004725;GO:0005515;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr11.230 rna-evm.model.Chr11.230 Chr11 9631826 9637637 PREDICTED: TCF3 fusion partner homolog GO:0006915 K11680
gene-evm.TU.Chr11.232 rna-evm.model.Chr11.232 Chr11 9642324 9647464 PREDICTED: Cyclin-O protein A GO:0005634 K10861

For more detailed data, you can explore the Download section to access the full dataset.