CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.21 rna-evm.model.Chr11.21 Chr11 1189847 1193041 PREDICTED: probable transcription factor PML nan K02342
gene-evm.TU.Chr11.210 rna-evm.model.Chr11.210 Chr11 8148421 8237190 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr11.211 rna-evm.model.Chr11.211 Chr11 8453723 8468219 PREDICTED: COP9 signalosome complex subunit 2 GO:0008180 K12176
gene-evm.TU.Chr11.212 rna-evm.model.Chr11.212 Chr11 8468207 8476573 PREDICTED: DET1- and DDB1-associated protein 1 GO:0032434 K11792
gene-evm.TU.Chr11.213 rna-evm.model.Chr11.213 Chr11 8488972 8502775 PREDICTED: Protein prenyltransferase alpha subunit repeat-containing protein 1 GO:0008318;GO:0018342 K14137
gene-evm.TU.Chr11.214 rna-evm.model.Chr11.214 Chr11 8502872 8544052 PREDICTED: Nuclear cap-binding protein subunit 1 GO:0000339;GO:0003723;GO:0005515;GO:0005846;GO:0016070;GO:0045292;GO:0051028 K12882
gene-evm.TU.Chr11.218 rna-evm.model.Chr11.218 Chr11 8922582 8928462 PREDICTED: RNA-binding protein MEX3B GO:0003676;GO:0003723 K15686
gene-evm.TU.Chr11.22 rna-evm.model.Chr11.22 Chr11 1193340 1195880 PREDICTED: KRAB domain-containing zinc finger protein nan nan
gene-evm.TU.Chr11.221 rna-evm.model.Chr11.221 Chr11 9024581 9033038 PREDICTED: Transmembrane 6 superfamily member 1 nan K25361
gene-evm.TU.Chr11.222 rna-evm.model.Chr11.222 Chr11 9038771 9048495 PREDICTED: Peptidyl-prolyl cis-trans isomerase B GO:0000413;GO:0003755 K09563

For more detailed data, you can explore the Download section to access the full dataset.