CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.194 rna-evm.model.Chr11.194 Chr11 7817417 7839002 PREDICTED: BLOC-1-related complex subunit 8 homolog nan K20822
gene-evm.TU.Chr11.195 rna-evm.model.Chr11.195 Chr11 7850840 7851577 PREDICTED: C-type lectin BfL-2 nan K06723
gene-evm.TU.Chr11.197 rna-evm.model.Chr11.197 Chr11 7881254 7882009 PREDICTED: C-type lectin BML-1 nan K06560
gene-evm.TU.Chr11.199 rna-evm.model.Chr11.199 Chr11 7889876 7890799 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0015074 K04763
gene-evm.TU.Chr11.20 rna-evm.model.Chr11.20 Chr11 1106948 1109192 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 GO:0003676;GO:0003677 K20015
gene-evm.TU.Chr11.200 rna-evm.model.Chr11.200 Chr11 7936502 7937722 PREDICTED: Zinc transporter ZIP3 GO:0016020;GO:0030001;GO:0046873;GO:0055085 K14709
gene-evm.TU.Chr11.204 rna-evm.model.Chr11.204 Chr11 8029073 8030278 PREDICTED: Interferon-inducible GTPase 1 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr11.206 rna-evm.model.Chr11.206 Chr11 8047374 8056726 PREDICTED: GPN-loop GTPase 2 nan K24104
gene-evm.TU.Chr11.207 rna-evm.model.Chr11.207 Chr11 8064074 8069439 uncharacterized protein nan nan
gene-evm.TU.Chr11.208 rna-evm.model.Chr11.208 Chr11 8073026 8085546 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698

For more detailed data, you can explore the Download section to access the full dataset.