CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.179 rna-evm.model.Chr11.179 Chr11 7166710 7168872 PREDICTED: Universal stress protein MJ0531 nan K06149
gene-evm.TU.Chr11.181 rna-evm.model.Chr11.181 Chr11 7176641 7198652 PREDICTED: Tudor domain-containing protein 10 GO:0003676 K13161
gene-evm.TU.Chr11.183 rna-evm.model.Chr11.183 Chr11 7234006 7234665 PREDICTED: Antho-RFamide neuropeptides nan K12849
gene-evm.TU.Chr11.184 rna-evm.model.Chr11.184 Chr11 7248166 7256133 PREDICTED: STI1-like protein (Fragment) GO:0005515 K09553
gene-evm.TU.Chr11.185 rna-evm.model.Chr11.185 Chr11 7256309 7269135 PREDICTED: small subunit ribosomal protein S27 nan K17406
gene-evm.TU.Chr11.187 rna-evm.model.Chr11.187 Chr11 7286773 7292959 uncharacterized protein nan K06149
gene-evm.TU.Chr11.188 rna-evm.model.Chr11.188 Chr11 7416708 7423098 PREDICTED: Neuropeptide receptor 15 GO:0004930;GO:0007186;GO:0016020 K04224
gene-evm.TU.Chr11.189 rna-evm.model.Chr11.189 Chr11 7703655 7728939 PREDICTED: Very long-chain acyl-CoA synthetase GO:0003824 K08749
gene-evm.TU.Chr11.19 rna-evm.model.Chr11.19 Chr11 1094222 1106356 PREDICTED: Heavy metal-binding protein HIP GO:0003677 K23284
gene-evm.TU.Chr11.190 rna-evm.model.Chr11.190 Chr11 7744714 7774610 PREDICTED: Arrestin domain-containing protein 17 nan K26229

For more detailed data, you can explore the Download section to access the full dataset.