CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1735 rna-evm.model.Chr11.1735 Chr11 69490690 69523470 PREDICTED: Cytosolic carboxypeptidase 1 GO:0004181;GO:0006508;GO:0008270 K23435
gene-evm.TU.Chr11.1737 rna-evm.model.Chr11.1737 Chr11 69529095 69540297 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr11.1738 rna-evm.model.Chr11.1738 Chr11 69553915 69566056 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr11.1739 rna-evm.model.Chr11.1739 Chr11 69567101 69576905 PREDICTED: proteoglycan 4-like nan K10408
gene-evm.TU.Chr11.174 rna-evm.model.Chr11.174 Chr11 7082627 7093494 PREDICTED: Caspase-6 GO:0004197;GO:0006508;GO:0008234 K04397
gene-evm.TU.Chr11.1740 rna-evm.model.Chr11.1740 Chr11 69585855 69592031 PREDICTED: MAM and LDL-receptor class A domain-containing protein 2 (Fragment) GO:0016020 K05119
gene-evm.TU.Chr11.1744 rna-evm.model.Chr11.1744 Chr11 69600314 69618465 PREDICTED: Calcium/calmodulin-dependent protein kinase type IV GO:0004672;GO:0005524;GO:0006468 K05869
gene-evm.TU.Chr11.1745 rna-evm.model.Chr11.1745 Chr11 69644941 69654167 PREDICTED: MAM and LDL-receptor class A domain-containing protein 2 (Fragment) GO:0016020 K24831
gene-evm.TU.Chr11.176 rna-evm.model.Chr11.176.1 Chr11 7113858 7129139 PREDICTED: Caspase-1 GO:0004197;GO:0006508;GO:0008234 K20008
gene-evm.TU.Chr11.178 rna-evm.model.Chr11.178 Chr11 7162739 7164157 PREDICTED: Alpha-protein kinase vwkA nan K24511

For more detailed data, you can explore the Download section to access the full dataset.