CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1724 rna-evm.model.Chr11.1724.1 Chr11 68892007 68959625 PREDICTED: Semaphorin-1A GO:0005515;GO:0030215 K06842
gene-evm.TU.Chr11.1725 rna-evm.model.Chr11.1725 Chr11 68966596 68973463 PREDICTED: Universal stress protein Sll1388 nan K06149
gene-evm.TU.Chr11.1726 rna-evm.model.Chr11.1726 Chr11 68975273 68985867 PREDICTED: Repetin nan K16628
gene-evm.TU.Chr11.1727 rna-evm.model.Chr11.1727 Chr11 69004595 69014463 PREDICTED: ADP-ribosylation factor-like protein 15 GO:0005525 K17201
gene-evm.TU.Chr11.173 rna-evm.model.Chr11.173 Chr11 7022805 7030482 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr11.1730 rna-evm.model.Chr11.1730 Chr11 69043130 69044749 uncharacterized protein nan nan
gene-evm.TU.Chr11.1731 rna-evm.model.Chr11.1731 Chr11 69051451 69054906 PREDICTED: mucin-2-like nan K06560
gene-evm.TU.Chr11.1732 rna-evm.model.Chr11.1732 Chr11 69071160 69073916 uncharacterized protein nan K06560
gene-evm.TU.Chr11.1733 rna-evm.model.Chr11.1733 Chr11 69099508 69124708 PREDICTED: Dual specificity mitogen-activated protein kinase kinase 1 GO:0004672;GO:0005524;GO:0006468 K04368
gene-evm.TU.Chr11.1734 rna-evm.model.Chr11.1734 Chr11 69134924 69293095 PREDICTED: Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0016020;GO:0055085 K04955

For more detailed data, you can explore the Download section to access the full dataset.