CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1700 rna-evm.model.Chr11.1700 Chr11 67849212 67849394 PREDICTED: Transposable element Tc1 transposase nan K07499
gene-evm.TU.Chr11.1704 rna-evm.model.Chr11.1704 Chr11 68132316 68136778 PREDICTED: Monocarboxylate transporter 3 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr11.1705 rna-evm.model.Chr11.1705 Chr11 68139608 68165132 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677;GO:0016491 K22594
gene-evm.TU.Chr11.1706 rna-evm.model.Chr11.1706 Chr11 68166044 68169327 uncharacterized protein nan K14273
gene-evm.TU.Chr11.1707 rna-evm.model.Chr11.1707 Chr11 68174324 68205223 PREDICTED: Uncharacterized oxidoreductase SP_1686 GO:0016491;GO:0055114 K18855
gene-evm.TU.Chr11.1709 rna-evm.model.Chr11.1709 Chr11 68225161 68261260 PREDICTED: Dual oxidase 2 GO:0005509;GO:0016174;GO:0016491;GO:0050665;GO:0055114 K13411
gene-evm.TU.Chr11.171 rna-evm.model.Chr11.171 Chr11 6916987 6997410 PREDICTED: Solute carrier family 12 member 2 GO:0005215;GO:0006811;GO:0016020;GO:0055085 K10951
gene-evm.TU.Chr11.1710 rna-evm.model.Chr11.1710 Chr11 68341899 68344653 uncharacterized protein nan nan
gene-evm.TU.Chr11.1711 rna-evm.model.Chr11.1711 Chr11 68357933 68364268 PREDICTED: Putative amine oxidase [copper-containing] GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr11.1712 rna-evm.model.Chr11.1712 Chr11 68377123 68394398 PREDICTED: NACHT and WD repeat domain-containing protein 2 GO:0005515 K24734

For more detailed data, you can explore the Download section to access the full dataset.