CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr11.1688 rna-evm.model.Chr11.1688 Chr11 67390335 67405731 PREDICTED: HAUS augmin-like complex subunit 1 GO:0051225;GO:0070652 K16584
gene-evm.TU.Chr11.1689 rna-evm.model.Chr11.1689 Chr11 67420871 67422592 PREDICTED: TELO2-interacting protein 2 nan K23115
gene-evm.TU.Chr11.1690 rna-evm.model.Chr11.1690 Chr11 67428782 67437983 PREDICTED: Vesicular glutamate transporter 3 GO:0016020;GO:0055085 K08193
gene-evm.TU.Chr11.1691 rna-evm.model.Chr11.1691 Chr11 67444978 67452384 PREDICTED: Zinc finger protein 77 GO:0003676 K22534
gene-evm.TU.Chr11.1694 rna-evm.model.Chr11.1694 Chr11 67540235 67540925 uncharacterized protein nan nan
gene-evm.TU.Chr11.1695 rna-evm.model.Chr11.1695 Chr11 67541185 67543846 PREDICTED: myotubularin-related protein 10/11/12 nan K18950
gene-evm.TU.Chr11.1696 rna-evm.model.Chr11.1696 Chr11 67616525 67747432 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr11.1698 rna-evm.model.Chr11.1698 Chr11 67782765 67783783 uncharacterized protein nan K05947
gene-evm.TU.Chr11.1699 rna-evm.model.Chr11.1699 Chr11 67837422 67840568 PREDICTED: trichohyalin nan K11014
gene-evm.TU.Chr11.170 rna-evm.model.Chr11.170 Chr11 6896336 6899715 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721

For more detailed data, you can explore the Download section to access the full dataset.